Cluster: HRGMv2_2040_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_00011
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_13 | HRGMv2_2040_13_33 | 44076 | 45353 | - | 3.A.1.103.4 |
| TC | HRGMv2_2040_13 | HRGMv2_2040_13_34 | 45369 | 46160 | - | 3.A.1.103.4 |
| CAZyme | HRGMv2_2040_13 | HRGMv2_2040_13_35 | 46201 | 47499 | - | GT4 |
| CAZyme | HRGMv2_2040_13 | HRGMv2_2040_13_36 | 47515 | 48636 | - | GT4 |
Gene ID: HRGMv2_2040_13_33
Type: TC
Location: 44076 - 45353 (-)
Type: TC
Location: 44076 - 45353 (-)
Gene ID: HRGMv2_2040_13_34
Type: TC
Location: 45369 - 46160 (-)
Type: TC
Location: 45369 - 46160 (-)
Gene ID: HRGMv2_2040_13_35
Type: CAZyme
Location: 46201 - 47499 (-)
Type: CAZyme
Location: 46201 - 47499 (-)
Gene ID: HRGMv2_2040_13_36
Type: CAZyme
Location: 47515 - 48636 (-)
Type: CAZyme
Location: 47515 - 48636 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.