Cluster: HRGMv2_2040_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_01575
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2040_12 | HRGMv2_2040_12_4 | 1639 | 2658 | + | GH25 |
| STP | HRGMv2_2040_12 | HRGMv2_2040_12_5 | 2655 | 3608 | - | NUDIX |
| pfam | HRGMv2_2040_12 | HRGMv2_2040_12_6 | 3610 | 4557 | - | cobW | DUF1980_C |
| TC | HRGMv2_2040_12 | HRGMv2_2040_12_7 | 4639 | 5802 | - | 9.B.10.1.1 |
Gene ID: HRGMv2_2040_12_4
Type: CAZyme
Location: 1639 - 2658 (+)
Type: CAZyme
Location: 1639 - 2658 (+)
Gene ID: HRGMv2_2040_12_5
Type: STP
Location: 2655 - 3608 (-)
Type: STP
Location: 2655 - 3608 (-)
Gene ID: HRGMv2_2040_12_6
Type: pfam
Location: 3610 - 4557 (-)
Type: pfam
Location: 3610 - 4557 (-)
Gene ID: HRGMv2_2040_12_7
Type: TC
Location: 4639 - 5802 (-)
Type: TC
Location: 4639 - 5802 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.