Cluster: HRGMv2_2040_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_02258
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_1 | HRGMv2_2040_1_74 | 68621 | 70417 | - | 9.B.34.1.2 |
| pfam | HRGMv2_2040_1 | HRGMv2_2040_1_75 | 70461 | 71171 | - | tRNA_m1G_MT |
| pfam | HRGMv2_2040_1 | HRGMv2_2040_1_76 | 71171 | 72031 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_2040_1 | HRGMv2_2040_1_77 | 72119 | 74233 | - | GH13_39 |
| TC | HRGMv2_2040_1 | HRGMv2_2040_1_78 | 74490 | 76358 | - | 3.A.16.1.2 |
Gene ID: HRGMv2_2040_1_74
Type: TC
Location: 68621 - 70417 (-)
Type: TC
Location: 68621 - 70417 (-)
Gene ID: HRGMv2_2040_1_75
Type: pfam
Location: 70461 - 71171 (-)
Type: pfam
Location: 70461 - 71171 (-)
Gene ID: HRGMv2_2040_1_76
Type: pfam
Location: 71171 - 72031 (-)
Type: pfam
Location: 71171 - 72031 (-)
Gene ID: HRGMv2_2040_1_77
Type: CAZyme
Location: 72119 - 74233 (-)
Type: CAZyme
Location: 72119 - 74233 (-)
Gene ID: HRGMv2_2040_1_78
Type: TC
Location: 74490 - 76358 (-)
Type: TC
Location: 74490 - 76358 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.