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Cluster: HRGMv2_2033_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2033_9 HRGMv2_2033_9_42 42779 43714 - 2.A.4.7.2
NULL(UNKNOWN) HRGMv2_2033_9 HRGMv2_2033_9_43 44176 44595 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2033_9 HRGMv2_2033_9_44 44676 45299 - 2.A.115.2.14
TC HRGMv2_2033_9 HRGMv2_2033_9_45 45363 46073 - 3.A.1.4.10
TC HRGMv2_2033_9 HRGMv2_2033_9_46 46086 46847 - 3.A.1.4.10
TC HRGMv2_2033_9 HRGMv2_2033_9_47 46847 47908 - 3.A.1.4.8
TC HRGMv2_2033_9 HRGMv2_2033_9_48 47918 48802 - 3.A.1.4.10
TC HRGMv2_2033_9 HRGMv2_2033_9_49 48920 50083 - 3.A.1.4.8
TF HRGMv2_2033_9 HRGMv2_2033_9_50 50436 51449 + LacI
CAZyme HRGMv2_2033_9 HRGMv2_2033_9_51 51465 53147 + GH13_18
TC HRGMv2_2033_9 HRGMv2_2033_9_52 53168 54481 + 3.A.1.1.46
TC HRGMv2_2033_9 HRGMv2_2033_9_53 54539 55417 + 3.A.1.1.46
TC HRGMv2_2033_9 HRGMv2_2033_9_54 55404 56249 + 3.A.1.1.46
pfam HRGMv2_2033_9 HRGMv2_2033_9_55 56272 57330 + ADH_zinc_N
pfam HRGMv2_2033_9 HRGMv2_2033_9_56 57354 58145 + AP_endonuc_2
CAZyme HRGMv2_2033_9 HRGMv2_2033_9_57 58207 59244 + GH179
CAZyme HRGMv2_2033_9 HRGMv2_2033_9_58 59264 61555 + GH65
Gene ID: HRGMv2_2033_9_42
Type: TC
Location: 42779 - 43714 (-)
Gene ID: HRGMv2_2033_9_43
Type:
Location: 44176 - 44595 (-)
Gene ID: HRGMv2_2033_9_44
Type: TC
Location: 44676 - 45299 (-)
Gene ID: HRGMv2_2033_9_45
Type: TC
Location: 45363 - 46073 (-)
Gene ID: HRGMv2_2033_9_46
Type: TC
Location: 46086 - 46847 (-)
Gene ID: HRGMv2_2033_9_47
Type: TC
Location: 46847 - 47908 (-)
Gene ID: HRGMv2_2033_9_48
Type: TC
Location: 47918 - 48802 (-)
Gene ID: HRGMv2_2033_9_49
Type: TC
Location: 48920 - 50083 (-)
Gene ID: HRGMv2_2033_9_50
Type: TF
Location: 50436 - 51449 (+)
Gene ID: HRGMv2_2033_9_51
Type: CAZyme
Location: 51465 - 53147 (+)
Gene ID: HRGMv2_2033_9_52
Type: TC
Location: 53168 - 54481 (+)
Gene ID: HRGMv2_2033_9_53
Type: TC
Location: 54539 - 55417 (+)
Gene ID: HRGMv2_2033_9_54
Type: TC
Location: 55404 - 56249 (+)
Gene ID: HRGMv2_2033_9_55
Type: pfam
Location: 56272 - 57330 (+)
Gene ID: HRGMv2_2033_9_56
Type: pfam
Location: 57354 - 58145 (+)
Gene ID: HRGMv2_2033_9_57
Type: CAZyme
Location: 58207 - 59244 (+)
Gene ID: HRGMv2_2033_9_58
Type: CAZyme
Location: 59264 - 61555 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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