Cluster: HRGMv2_2029_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2029
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2029_25 | HRGMv2_2029_25_1 | 332 | 2056 | - | GH57 |
| TF | HRGMv2_2029_25 | HRGMv2_2029_25_2 | 2216 | 2536 | - | HTH_3 |
| CAZyme | HRGMv2_2029_25 | HRGMv2_2029_25_3 | 2703 | 3551 | + | GT2 |
| CAZyme | HRGMv2_2029_25 | HRGMv2_2029_25_4 | 3610 | 4287 | - | GH23 |
| pfam | HRGMv2_2029_25 | HRGMv2_2029_25_5 | 4542 | 6887 | - | Lactamase_B | Competence | DUF4131 |
| TC | HRGMv2_2029_25 | HRGMv2_2029_25_6 | 7030 | 8142 | + | 3.A.15.2.1 |
Gene ID: HRGMv2_2029_25_1
Type: CAZyme
Location: 332 - 2056 (-)
Type: CAZyme
Location: 332 - 2056 (-)
Gene ID: HRGMv2_2029_25_2
Type: TF
Location: 2216 - 2536 (-)
Type: TF
Location: 2216 - 2536 (-)
Gene ID: HRGMv2_2029_25_3
Type: CAZyme
Location: 2703 - 3551 (+)
Type: CAZyme
Location: 2703 - 3551 (+)
Gene ID: HRGMv2_2029_25_4
Type: CAZyme
Location: 3610 - 4287 (-)
Type: CAZyme
Location: 3610 - 4287 (-)
Gene ID: HRGMv2_2029_25_5
Type: pfam
Location: 4542 - 6887 (-)
Type: pfam
Location: 4542 - 6887 (-)
Gene ID: HRGMv2_2029_25_6
Type: TC
Location: 7030 - 8142 (+)
Type: TC
Location: 7030 - 8142 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
Zag111
Species
Zag111 sp934718135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2029_25_4 | vegan > omnivore | 18.45241 | 0.01332 |
| HRGMv2_2029_25_4 | vegetarian > omnivore | 20.34354 | 0.00565 |
| HRGMv2_2029_25_6 | vegan > omnivore | 19.58838 | 0.01332 |
| HRGMv2_2029_25_6 | vegetarian > omnivore | 20.47420 | 0.00565 |