Cluster: HRGMv2_2019_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2019
- CGC Family ID: CGCFAM_05542
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2019_26 | HRGMv2_2019_26_4 | 3657 | 5681 | - | GH38 |
| CAZyme | HRGMv2_2019_26 | HRGMv2_2019_26_5 | 5953 | 7677 | + | GH57 |
| TC | HRGMv2_2019_26 | HRGMv2_2019_26_6 | 8640 | 9791 | + | 2.A.6.2.45 |
| TC | HRGMv2_2019_26 | HRGMv2_2019_26_7 | 9833 | 12958 | + | 2.A.6.2.16 |
| TC | HRGMv2_2019_26 | HRGMv2_2019_26_8 | 12958 | 14394 | + | 1.B.17.2.5 |
Gene ID: HRGMv2_2019_26_4
Type: CAZyme
Location: 3657 - 5681 (-)
Type: CAZyme
Location: 3657 - 5681 (-)
Gene ID: HRGMv2_2019_26_5
Type: CAZyme
Location: 5953 - 7677 (+)
Type: CAZyme
Location: 5953 - 7677 (+)
Gene ID: HRGMv2_2019_26_6
Type: TC
Location: 8640 - 9791 (+)
Type: TC
Location: 8640 - 9791 (+)
Gene ID: HRGMv2_2019_26_7
Type: TC
Location: 9833 - 12958 (+)
Type: TC
Location: 9833 - 12958 (+)
Gene ID: HRGMv2_2019_26_8
Type: TC
Location: 12958 - 14394 (+)
Type: TC
Location: 12958 - 14394 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
UBA1221
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2019_26_5 | vegetarian > omnivore | 1.95991 | 0.03451 |