Cluster: HRGMv2_2019_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2019
- CGC Family ID: CGCFAM_00013
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2019_20 | HRGMv2_2019_20_10 | 13134 | 15428 | - | 3.A.11.3.1 |
| pfam | HRGMv2_2019_20 | HRGMv2_2019_20_11 | 15450 | 15680 | - | PC4 |
| NULL(UNKNOWN) | HRGMv2_2019_20 | HRGMv2_2019_20_12 | 15861 | 16244 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2019_20 | HRGMv2_2019_20_13 | 16247 | 17347 | - | GT28 |
| TC | HRGMv2_2019_20 | HRGMv2_2019_20_14 | 17340 | 18557 | - | 2.A.103.1.3 |
| pfam | HRGMv2_2019_20 | HRGMv2_2019_20_15 | 18505 | 19860 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_2019_20 | HRGMv2_2019_20_16 | 19860 | 20840 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_2019_20_10
Type: TC
Location: 13134 - 15428 (-)
Type: TC
Location: 13134 - 15428 (-)
Gene ID: HRGMv2_2019_20_11
Type: pfam
Location: 15450 - 15680 (-)
Type: pfam
Location: 15450 - 15680 (-)
Gene ID: HRGMv2_2019_20_12
Type:
Location: 15861 - 16244 (+)
Type:
Location: 15861 - 16244 (+)
Gene ID: HRGMv2_2019_20_13
Type: CAZyme
Location: 16247 - 17347 (-)
Type: CAZyme
Location: 16247 - 17347 (-)
Gene ID: HRGMv2_2019_20_14
Type: TC
Location: 17340 - 18557 (-)
Type: TC
Location: 17340 - 18557 (-)
Gene ID: HRGMv2_2019_20_15
Type: pfam
Location: 18505 - 19860 (-)
Type: pfam
Location: 18505 - 19860 (-)
Gene ID: HRGMv2_2019_20_16
Type: TC
Location: 19860 - 20840 (-)
Type: TC
Location: 19860 - 20840 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
UBA1221
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.