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Cluster: HRGMv2_2019_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2019_2 HRGMv2_2019_2_38 42995 44713 - 8.A.59.4.1
CAZyme HRGMv2_2019_2 HRGMv2_2019_2_39 44815 45507 + GT2
peptidase HRGMv2_2019_2 HRGMv2_2019_2_40 45537 46367 + M48.UNW
TC HRGMv2_2019_2 HRGMv2_2019_2_41 46415 47959 - 2.A.1.3.36
TC HRGMv2_2019_2 HRGMv2_2019_2_42 47970 49526 - 2.A.1.3.36
TC HRGMv2_2019_2 HRGMv2_2019_2_43 49598 50596 - 8.A.1.1.2
TF HRGMv2_2019_2 HRGMv2_2019_2_44 50610 51077 - MarR
TC HRGMv2_2019_2 HRGMv2_2019_2_45 51199 52596 + 2.A.6.2.22
Gene ID: HRGMv2_2019_2_38
Type: TC
Location: 42995 - 44713 (-)
Gene ID: HRGMv2_2019_2_39
Type: CAZyme
Location: 44815 - 45507 (+)
Gene ID: HRGMv2_2019_2_40
Type: peptidase
Location: 45537 - 46367 (+)
Gene ID: HRGMv2_2019_2_41
Type: TC
Location: 46415 - 47959 (-)
Gene ID: HRGMv2_2019_2_42
Type: TC
Location: 47970 - 49526 (-)
Gene ID: HRGMv2_2019_2_43
Type: TC
Location: 49598 - 50596 (-)
Gene ID: HRGMv2_2019_2_44
Type: TF
Location: 50610 - 51077 (-)
Gene ID: HRGMv2_2019_2_45
Type: TC
Location: 51199 - 52596 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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