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Cluster: HRGMv2_2018_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2018_40 HRGMv2_2018_40_12 7682 9079 - 2.A.6.2.22
TF HRGMv2_2018_40 HRGMv2_2018_40_13 9201 9668 + MarR
TC HRGMv2_2018_40 HRGMv2_2018_40_14 9682 10680 + 8.A.1.1.2
TC HRGMv2_2018_40 HRGMv2_2018_40_15 10752 12308 + 2.A.1.3.36
TC HRGMv2_2018_40 HRGMv2_2018_40_16 12319 13863 + 2.A.1.3.36
peptidase HRGMv2_2018_40 HRGMv2_2018_40_17 13911 14741 - M48.UNW
CAZyme HRGMv2_2018_40 HRGMv2_2018_40_18 14771 15463 - GT2
TC HRGMv2_2018_40 HRGMv2_2018_40_19 15563 17203 + 8.A.59.4.1
Gene ID: HRGMv2_2018_40_12
Type: TC
Location: 7682 - 9079 (-)
Gene ID: HRGMv2_2018_40_13
Type: TF
Location: 9201 - 9668 (+)
Gene ID: HRGMv2_2018_40_14
Type: TC
Location: 9682 - 10680 (+)
Gene ID: HRGMv2_2018_40_15
Type: TC
Location: 10752 - 12308 (+)
Gene ID: HRGMv2_2018_40_16
Type: TC
Location: 12319 - 13863 (+)
Gene ID: HRGMv2_2018_40_17
Type: peptidase
Location: 13911 - 14741 (-)
Gene ID: HRGMv2_2018_40_18
Type: CAZyme
Location: 14771 - 15463 (-)
Gene ID: HRGMv2_2018_40_19
Type: TC
Location: 15563 - 17203 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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