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Cluster: HRGMv2_2018_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2018_5 HRGMv2_2018_5_2 251 565 - 2.A.7.1.11
TC HRGMv2_2018_5 HRGMv2_2018_5_3 763 2115 + 2.A.23.1.2
pfam HRGMv2_2018_5 HRGMv2_2018_5_4 2122 4935 + tRNA-synt_1 | tRNA-synt_1e | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | tRNA-synt_1g
CAZyme HRGMv2_2018_5 HRGMv2_2018_5_5 5021 6100 - GT2
CAZyme HRGMv2_2018_5 HRGMv2_2018_5_6 6113 7006 - GT8
CAZyme HRGMv2_2018_5 HRGMv2_2018_5_7 6999 8933 - GT8
CAZyme HRGMv2_2018_5 HRGMv2_2018_5_8 8940 9992 - GT9
Gene ID: HRGMv2_2018_5_2
Type: TC
Location: 251 - 565 (-)
Gene ID: HRGMv2_2018_5_3
Type: TC
Location: 763 - 2115 (+)
Gene ID: HRGMv2_2018_5_4
Type: pfam
Location: 2122 - 4935 (+)
Gene ID: HRGMv2_2018_5_5
Type: CAZyme
Location: 5021 - 6100 (-)
Gene ID: HRGMv2_2018_5_6
Type: CAZyme
Location: 6113 - 7006 (-)
Gene ID: HRGMv2_2018_5_7
Type: CAZyme
Location: 6999 - 8933 (-)
Gene ID: HRGMv2_2018_5_8
Type: CAZyme
Location: 8940 - 9992 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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