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Cluster: HRGMv2_2017_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2017_8 HRGMv2_2017_8_30 25413 28073 + 8.A.7.1.5
NULL(UNKNOWN) HRGMv2_2017_8 HRGMv2_2017_8_31 28166 28480 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2017_8 HRGMv2_2017_8_32 28685 28957 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2017_8 HRGMv2_2017_8_33 29046 30386 + 2.A.17.1.7
NULL(UNKNOWN) HRGMv2_2017_8 HRGMv2_2017_8_34 30437 30754 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2017_8 HRGMv2_2017_8_35 30790 32523 + PMT_2
CAZyme HRGMv2_2017_8 HRGMv2_2017_8_36 32559 33287 - GT2
pfam HRGMv2_2017_8 HRGMv2_2017_8_37 33669 34139 - SPOUT_MTase
TC HRGMv2_2017_8 HRGMv2_2017_8_38 34129 34947 - 1.A.23.4.2
Gene ID: HRGMv2_2017_8_30
Type: TC
Location: 25413 - 28073 (+)
Gene ID: HRGMv2_2017_8_31
Type:
Location: 28166 - 28480 (-)
Gene ID: HRGMv2_2017_8_32
Type:
Location: 28685 - 28957 (+)
Gene ID: HRGMv2_2017_8_33
Type: TC
Location: 29046 - 30386 (+)
Gene ID: HRGMv2_2017_8_34
Type:
Location: 30437 - 30754 (+)
Gene ID: HRGMv2_2017_8_35
Type: pfam
Location: 30790 - 32523 (+)
Gene ID: HRGMv2_2017_8_36
Type: CAZyme
Location: 32559 - 33287 (-)
Gene ID: HRGMv2_2017_8_37
Type: pfam
Location: 33669 - 34139 (-)
Gene ID: HRGMv2_2017_8_38
Type: TC
Location: 34129 - 34947 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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