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Cluster: HRGMv2_2013_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2013_2 HRGMv2_2013_2_7 5525 7876 - 3.A.11.1.1
TF HRGMv2_2013_2 HRGMv2_2013_2_8 7857 8090 - HTH_3
pfam HRGMv2_2013_2 HRGMv2_2013_2_9 8243 8515 + Trns_repr_metal
TC HRGMv2_2013_2 HRGMv2_2013_2_10 8521 9240 + 2.A.4.3.9
NULL(UNKNOWN) HRGMv2_2013_2 HRGMv2_2013_2_11 9536 10237 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2013_2 HRGMv2_2013_2_12 10247 10582 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2013_2 HRGMv2_2013_2_13 10672 11496 - 3.A.1.1.34
TC HRGMv2_2013_2 HRGMv2_2013_2_14 11745 13631 + 1.B.33.1.1
pfam HRGMv2_2013_2 HRGMv2_2013_2_15 13656 14111 + OmpH
pfam HRGMv2_2013_2 HRGMv2_2013_2_16 14152 15615 + FHIPEP
CAZyme HRGMv2_2013_2 HRGMv2_2013_2_17 15651 17849 + GH77
Gene ID: HRGMv2_2013_2_7
Type: TC
Location: 5525 - 7876 (-)
Gene ID: HRGMv2_2013_2_8
Type: TF
Location: 7857 - 8090 (-)
Gene ID: HRGMv2_2013_2_9
Type: pfam
Location: 8243 - 8515 (+)
Gene ID: HRGMv2_2013_2_10
Type: TC
Location: 8521 - 9240 (+)
Gene ID: HRGMv2_2013_2_11
Type:
Location: 9536 - 10237 (-)
Gene ID: HRGMv2_2013_2_12
Type:
Location: 10247 - 10582 (-)
Gene ID: HRGMv2_2013_2_13
Type: TC
Location: 10672 - 11496 (-)
Gene ID: HRGMv2_2013_2_14
Type: TC
Location: 11745 - 13631 (+)
Gene ID: HRGMv2_2013_2_15
Type: pfam
Location: 13656 - 14111 (+)
Gene ID: HRGMv2_2013_2_16
Type: pfam
Location: 14152 - 15615 (+)
Gene ID: HRGMv2_2013_2_17
Type: CAZyme
Location: 15651 - 17849 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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