Cluster: HRGMv2_2006_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2006
- CGC Family ID: CGCFAM_09922
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2006_5 | HRGMv2_2006_5_98 | 93156 | 94730 | - | 2.A.1.3.62 |
| TC | HRGMv2_2006_5 | HRGMv2_2006_5_99 | 94814 | 95821 | - | 8.A.1.1.2 |
| TF | HRGMv2_2006_5 | HRGMv2_2006_5_100 | 95834 | 96295 | - | MarR |
| TC | HRGMv2_2006_5 | HRGMv2_2006_5_101 | 96413 | 97816 | + | 2.A.6.2.22 |
| pfam | HRGMv2_2006_5 | HRGMv2_2006_5_102 | 97920 | 98945 | - | Aminotran_4 |
| pfam | HRGMv2_2006_5 | HRGMv2_2006_5_103 | 99031 | 100152 | - | DNA_pol3_beta | DNA_pol3_beta_2 | DNA_pol3_beta_3 |
| CAZyme | HRGMv2_2006_5 | HRGMv2_2006_5_104 | 100722 | 102437 | + | GT83 |
| NULL(UNKNOWN) | HRGMv2_2006_5 | HRGMv2_2006_5_105 | 102437 | 103000 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2006_5 | HRGMv2_2006_5_106 | 103068 | 103262 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2006_5 | HRGMv2_2006_5_107 | 103415 | 104332 | + | GT8 |
| CAZyme | HRGMv2_2006_5 | HRGMv2_2006_5_108 | 104329 | 105246 | - | GT8 |
Gene ID: HRGMv2_2006_5_98
Type: TC
Location: 93156 - 94730 (-)
Type: TC
Location: 93156 - 94730 (-)
Gene ID: HRGMv2_2006_5_99
Type: TC
Location: 94814 - 95821 (-)
Type: TC
Location: 94814 - 95821 (-)
Gene ID: HRGMv2_2006_5_100
Type: TF
Location: 95834 - 96295 (-)
Type: TF
Location: 95834 - 96295 (-)
Gene ID: HRGMv2_2006_5_101
Type: TC
Location: 96413 - 97816 (+)
Type: TC
Location: 96413 - 97816 (+)
Gene ID: HRGMv2_2006_5_102
Type: pfam
Location: 97920 - 98945 (-)
Type: pfam
Location: 97920 - 98945 (-)
Gene ID: HRGMv2_2006_5_103
Type: pfam
Location: 99031 - 100152 (-)
Type: pfam
Location: 99031 - 100152 (-)
Gene ID: HRGMv2_2006_5_104
Type: CAZyme
Location: 100722 - 102437 (+)
Type: CAZyme
Location: 100722 - 102437 (+)
Gene ID: HRGMv2_2006_5_105
Type:
Location: 102437 - 103000 (+)
Type:
Location: 102437 - 103000 (+)
Gene ID: HRGMv2_2006_5_106
Type:
Location: 103068 - 103262 (-)
Type:
Location: 103068 - 103262 (-)
Gene ID: HRGMv2_2006_5_107
Type: CAZyme
Location: 103415 - 104332 (+)
Type: CAZyme
Location: 103415 - 104332 (+)
Gene ID: HRGMv2_2006_5_108
Type: CAZyme
Location: 104329 - 105246 (-)
Type: CAZyme
Location: 104329 - 105246 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
Zag111
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2006_5_98 | vegan > omnivore | 18.48452 | 0.00565 |
| HRGMv2_2006_5_98 | vegetarian > omnivore | 19.13689 | 0.01332 |
| HRGMv2_2006_5_101 | vegan > omnivore | 17.42929 | 0.00565 |
| HRGMv2_2006_5_101 | vegetarian > omnivore | 19.91462 | 0.01332 |
| HRGMv2_2006_5_102 | vegan > omnivore | 1.38158 | 0.00565 |
| HRGMv2_2006_5_106 | vegan > omnivore | 17.90805 | 0.00565 |
| HRGMv2_2006_5_106 | vegetarian > omnivore | 20.23067 | 0.01332 |