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Cluster: HRGMv2_2005_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2005_2 HRGMv2_2005_2_82 72957 75182 - GH57
NULL(UNKNOWN) HRGMv2_2005_2 HRGMv2_2005_2_83 75251 76000 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2005_2 HRGMv2_2005_2_84 75997 76275 - ACT
TC HRGMv2_2005_2 HRGMv2_2005_2_85 76251 77828 - 2.A.25.1.1
CAZyme HRGMv2_2005_2 HRGMv2_2005_2_86 77943 79076 - GT4
STP HRGMv2_2005_2 HRGMv2_2005_2_87 79159 79650 + TPR_1 | TPR_1 | TPR_1
CAZyme HRGMv2_2005_2 HRGMv2_2005_2_88 80118 81140 - GH3
Gene ID: HRGMv2_2005_2_82
Type: CAZyme
Location: 72957 - 75182 (-)
Gene ID: HRGMv2_2005_2_83
Type:
Location: 75251 - 76000 (+)
Gene ID: HRGMv2_2005_2_84
Type: STP
Location: 75997 - 76275 (-)
Gene ID: HRGMv2_2005_2_85
Type: TC
Location: 76251 - 77828 (-)
Gene ID: HRGMv2_2005_2_86
Type: CAZyme
Location: 77943 - 79076 (-)
Gene ID: HRGMv2_2005_2_87
Type: STP
Location: 79159 - 79650 (+)
Gene ID: HRGMv2_2005_2_88
Type: CAZyme
Location: 80118 - 81140 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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