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Cluster: HRGMv2_2003_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2003_1 HRGMv2_2003_1_479 507193 507849 - GH23
pfam HRGMv2_2003_1 HRGMv2_2003_1_480 508160 508963 + PNP_UDP_1
TC HRGMv2_2003_1 HRGMv2_2003_1_481 508988 509257 + 9.A.4.2.3
NULL(UNKNOWN) HRGMv2_2003_1 HRGMv2_2003_1_482 509225 510208 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2003_1 HRGMv2_2003_1_483 510285 511625 + 2.A.38.1.1
TC HRGMv2_2003_1 HRGMv2_2003_1_484 511627 513096 + 2.A.38.1.5
NULL(UNKNOWN) HRGMv2_2003_1 HRGMv2_2003_1_485 513093 513788 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2003_1 HRGMv2_2003_1_486 513971 515377 + 1.B.17.2.5
pfam HRGMv2_2003_1 HRGMv2_2003_1_487 515377 516561 + HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_2003_1 HRGMv2_2003_1_488 516565 517269 + 3.A.1.122.2
TC HRGMv2_2003_1 HRGMv2_2003_1_489 517281 518507 + 3.A.1.122.2
Gene ID: HRGMv2_2003_1_479
Type: CAZyme
Location: 507193 - 507849 (-)
Gene ID: HRGMv2_2003_1_480
Type: pfam
Location: 508160 - 508963 (+)
Gene ID: HRGMv2_2003_1_481
Type: TC
Location: 508988 - 509257 (+)
Gene ID: HRGMv2_2003_1_482
Type:
Location: 509225 - 510208 (-)
Gene ID: HRGMv2_2003_1_483
Type: TC
Location: 510285 - 511625 (+)
Gene ID: HRGMv2_2003_1_484
Type: TC
Location: 511627 - 513096 (+)
Gene ID: HRGMv2_2003_1_485
Type:
Location: 513093 - 513788 (-)
Gene ID: HRGMv2_2003_1_486
Type: TC
Location: 513971 - 515377 (+)
Gene ID: HRGMv2_2003_1_487
Type: pfam
Location: 515377 - 516561 (+)
Gene ID: HRGMv2_2003_1_488
Type: TC
Location: 516565 - 517269 (+)
Gene ID: HRGMv2_2003_1_489
Type: TC
Location: 517281 - 518507 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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