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Cluster: HRGMv2_2002_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2002_4 HRGMv2_2002_4_46 41757 42851 + GT2
CAZyme HRGMv2_2002_4 HRGMv2_2002_4_47 42844 43998 + GT2
CAZyme HRGMv2_2002_4 HRGMv2_2002_4_48 44009 46378 + GT2
pfam HRGMv2_2002_4 HRGMv2_2002_4_49 46378 48534 + Radical_SAM
CAZyme HRGMv2_2002_4 HRGMv2_2002_4_50 48531 49124 + CE4
pfam HRGMv2_2002_4 HRGMv2_2002_4_51 49135 50382 + TylF | Methyltransf_24
TC HRGMv2_2002_4 HRGMv2_2002_4_52 50398 53265 + 3.A.1.106.1
NULL(UNKNOWN) HRGMv2_2002_4 HRGMv2_2002_4_53 53380 53673 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2002_4 HRGMv2_2002_4_54 53710 54288 - Ank | Ank_2 | Ank_2 | Ank_4
TC HRGMv2_2002_4 HRGMv2_2002_4_55 54314 55921 - 2.A.53.3.3
TF HRGMv2_2002_4 HRGMv2_2002_4_56 55989 56657 - GerE
TC HRGMv2_2002_4 HRGMv2_2002_4_57 56977 58617 + 3.D.10.1.4
Gene ID: HRGMv2_2002_4_46
Type: CAZyme
Location: 41757 - 42851 (+)
Gene ID: HRGMv2_2002_4_47
Type: CAZyme
Location: 42844 - 43998 (+)
Gene ID: HRGMv2_2002_4_48
Type: CAZyme
Location: 44009 - 46378 (+)
Gene ID: HRGMv2_2002_4_49
Type: pfam
Location: 46378 - 48534 (+)
Gene ID: HRGMv2_2002_4_50
Type: CAZyme
Location: 48531 - 49124 (+)
Gene ID: HRGMv2_2002_4_51
Type: pfam
Location: 49135 - 50382 (+)
Gene ID: HRGMv2_2002_4_52
Type: TC
Location: 50398 - 53265 (+)
Gene ID: HRGMv2_2002_4_53
Type:
Location: 53380 - 53673 (+)
Gene ID: HRGMv2_2002_4_54
Type: pfam
Location: 53710 - 54288 (-)
Gene ID: HRGMv2_2002_4_55
Type: TC
Location: 54314 - 55921 (-)
Gene ID: HRGMv2_2002_4_56
Type: TF
Location: 55989 - 56657 (-)
Gene ID: HRGMv2_2002_4_57
Type: TC
Location: 56977 - 58617 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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