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Cluster: HRGMv2_2002_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2002_1 HRGMv2_2002_1_733 744536 745174 - GH23
pfam HRGMv2_2002_1 HRGMv2_2002_1_734 745480 746283 + PNP_UDP_1
pfam HRGMv2_2002_1 HRGMv2_2002_1_735 746296 746565 + YGGT
TC HRGMv2_2002_1 HRGMv2_2002_1_736 746611 747951 + 2.A.38.1.1
TC HRGMv2_2002_1 HRGMv2_2002_1_737 747953 749422 + 2.A.38.1.1
TC HRGMv2_2002_1 HRGMv2_2002_1_738 749509 750954 + 1.B.17.2.5
pfam HRGMv2_2002_1 HRGMv2_2002_1_739 750954 752144 + HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_2002_1 HRGMv2_2002_1_740 752153 752857 + 3.A.1.122.2
TC HRGMv2_2002_1 HRGMv2_2002_1_741 752869 754095 + 3.A.1.122.12
Gene ID: HRGMv2_2002_1_733
Type: CAZyme
Location: 744536 - 745174 (-)
Gene ID: HRGMv2_2002_1_734
Type: pfam
Location: 745480 - 746283 (+)
Gene ID: HRGMv2_2002_1_735
Type: pfam
Location: 746296 - 746565 (+)
Gene ID: HRGMv2_2002_1_736
Type: TC
Location: 746611 - 747951 (+)
Gene ID: HRGMv2_2002_1_737
Type: TC
Location: 747953 - 749422 (+)
Gene ID: HRGMv2_2002_1_738
Type: TC
Location: 749509 - 750954 (+)
Gene ID: HRGMv2_2002_1_739
Type: pfam
Location: 750954 - 752144 (+)
Gene ID: HRGMv2_2002_1_740
Type: TC
Location: 752153 - 752857 (+)
Gene ID: HRGMv2_2002_1_741
Type: TC
Location: 752869 - 754095 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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