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Cluster: HRGMv2_2002_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2002_1 HRGMv2_2002_1_652 669855 671420 + GT2
pfam HRGMv2_2002_1 HRGMv2_2002_1_653 671395 672555 - Mur_ligase_C | Mur_ligase_M
pfam HRGMv2_2002_1 HRGMv2_2002_1_654 672593 673240 - N_methyl | DUF6613
CAZyme HRGMv2_2002_1 HRGMv2_2002_1_655 673368 674504 - GT28
TC HRGMv2_2002_1 HRGMv2_2002_1_656 674504 675685 - 2.A.103.1.3
pfam HRGMv2_2002_1 HRGMv2_2002_1_657 675663 677027 - Mur_ligase_C | Mur_ligase_M | MurD-like_N
TC HRGMv2_2002_1 HRGMv2_2002_1_658 677027 678007 - 9.B.146.1.6
Gene ID: HRGMv2_2002_1_652
Type: CAZyme
Location: 669855 - 671420 (+)
Gene ID: HRGMv2_2002_1_653
Type: pfam
Location: 671395 - 672555 (-)
Gene ID: HRGMv2_2002_1_654
Type: pfam
Location: 672593 - 673240 (-)
Gene ID: HRGMv2_2002_1_655
Type: CAZyme
Location: 673368 - 674504 (-)
Gene ID: HRGMv2_2002_1_656
Type: TC
Location: 674504 - 675685 (-)
Gene ID: HRGMv2_2002_1_657
Type: pfam
Location: 675663 - 677027 (-)
Gene ID: HRGMv2_2002_1_658
Type: TC
Location: 677027 - 678007 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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