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Cluster: HRGMv2_2001_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2001_2 HRGMv2_2001_2_225 219184 220842 + 2.A.21.9.1
STP HRGMv2_2001_2 HRGMv2_2001_2_226 221204 222061 + HEAT_PBS | HEAT_PBS
pfam HRGMv2_2001_2 HRGMv2_2001_2_227 222319 223038 + N_methyl
CAZyme HRGMv2_2001_2 HRGMv2_2001_2_228 223041 223826 - GT2
pfam HRGMv2_2001_2 HRGMv2_2001_2_229 223873 224238 - Ribosomal_S30AE
NULL(UNKNOWN) HRGMv2_2001_2 HRGMv2_2001_2_230 224333 224536 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2001_2 HRGMv2_2001_2_231 224895 225434 - 2.A.107.1.2
Gene ID: HRGMv2_2001_2_225
Type: TC
Location: 219184 - 220842 (+)
Gene ID: HRGMv2_2001_2_226
Type: STP
Location: 221204 - 222061 (+)
Gene ID: HRGMv2_2001_2_227
Type: pfam
Location: 222319 - 223038 (+)
Gene ID: HRGMv2_2001_2_228
Type: CAZyme
Location: 223041 - 223826 (-)
Gene ID: HRGMv2_2001_2_229
Type: pfam
Location: 223873 - 224238 (-)
Gene ID: HRGMv2_2001_2_230
Type:
Location: 224333 - 224536 (-)
Gene ID: HRGMv2_2001_2_231
Type: TC
Location: 224895 - 225434 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2001_2_229 vegetarian > omnivore 21.19341 0.01332
HRGMv2_2001_2_230 vegetarian > omnivore 22.30021 0.01332

🧭 Explore Read Mapping of CGC

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