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Cluster: HRGMv2_2001_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2001_1 HRGMv2_2001_1_319 320212 320850 - GH23
pfam HRGMv2_2001_1 HRGMv2_2001_1_320 321153 321956 + PNP_UDP_1
pfam HRGMv2_2001_1 HRGMv2_2001_1_321 321969 322238 + YGGT
TC HRGMv2_2001_1 HRGMv2_2001_1_322 322284 323624 + 2.A.38.1.1
TC HRGMv2_2001_1 HRGMv2_2001_1_323 323626 325095 + 2.A.38.1.1
TC HRGMv2_2001_1 HRGMv2_2001_1_324 325176 326621 + 1.B.17.2.5
pfam HRGMv2_2001_1 HRGMv2_2001_1_325 326621 327814 + HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_2001_1 HRGMv2_2001_1_326 327824 328528 + 3.A.1.122.2
TC HRGMv2_2001_1 HRGMv2_2001_1_327 328538 329764 + 3.A.1.122.12
Gene ID: HRGMv2_2001_1_319
Type: CAZyme
Location: 320212 - 320850 (-)
Gene ID: HRGMv2_2001_1_320
Type: pfam
Location: 321153 - 321956 (+)
Gene ID: HRGMv2_2001_1_321
Type: pfam
Location: 321969 - 322238 (+)
Gene ID: HRGMv2_2001_1_322
Type: TC
Location: 322284 - 323624 (+)
Gene ID: HRGMv2_2001_1_323
Type: TC
Location: 323626 - 325095 (+)
Gene ID: HRGMv2_2001_1_324
Type: TC
Location: 325176 - 326621 (+)
Gene ID: HRGMv2_2001_1_325
Type: pfam
Location: 326621 - 327814 (+)
Gene ID: HRGMv2_2001_1_326
Type: TC
Location: 327824 - 328528 (+)
Gene ID: HRGMv2_2001_1_327
Type: TC
Location: 328538 - 329764 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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