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Cluster: HRGMv2_2001_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2001_10 HRGMv2_2001_10_5 4862 5956 + GT2
CAZyme HRGMv2_2001_10 HRGMv2_2001_10_6 5949 7028 + GT2
CAZyme HRGMv2_2001_10 HRGMv2_2001_10_7 7025 9385 + GT2
pfam HRGMv2_2001_10 HRGMv2_2001_10_8 9385 11523 + Radical_SAM
CAZyme HRGMv2_2001_10 HRGMv2_2001_10_9 11520 12113 + CE4
pfam HRGMv2_2001_10 HRGMv2_2001_10_10 12124 13206 + Radical_SAM
TC HRGMv2_2001_10 HRGMv2_2001_10_11 13193 16054 + 3.A.1.106.1
Gene ID: HRGMv2_2001_10_5
Type: CAZyme
Location: 4862 - 5956 (+)
Gene ID: HRGMv2_2001_10_6
Type: CAZyme
Location: 5949 - 7028 (+)
Gene ID: HRGMv2_2001_10_7
Type: CAZyme
Location: 7025 - 9385 (+)
Gene ID: HRGMv2_2001_10_8
Type: pfam
Location: 9385 - 11523 (+)
Gene ID: HRGMv2_2001_10_9
Type: CAZyme
Location: 11520 - 12113 (+)
Gene ID: HRGMv2_2001_10_10
Type: pfam
Location: 12124 - 13206 (+)
Gene ID: HRGMv2_2001_10_11
Type: TC
Location: 13193 - 16054 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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