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Cluster: HRGMv2_2000_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2000_2 HRGMv2_2000_2_75 80387 81613 - 3.A.1.122.12
TC HRGMv2_2000_2 HRGMv2_2000_2_76 81623 82327 - 3.A.1.122.2
pfam HRGMv2_2000_2 HRGMv2_2000_2_77 82336 83529 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_2000_2 HRGMv2_2000_2_78 83532 84974 - 1.B.17.2.5
TC HRGMv2_2000_2 HRGMv2_2000_2_79 85055 86524 - 2.A.38.1.1
TC HRGMv2_2000_2 HRGMv2_2000_2_80 86526 87866 - 2.A.38.1.1
pfam HRGMv2_2000_2 HRGMv2_2000_2_81 87913 88182 - YGGT
pfam HRGMv2_2000_2 HRGMv2_2000_2_82 88195 88998 - PNP_UDP_1
CAZyme HRGMv2_2000_2 HRGMv2_2000_2_83 89301 89939 + GH23
Gene ID: HRGMv2_2000_2_75
Type: TC
Location: 80387 - 81613 (-)
Gene ID: HRGMv2_2000_2_76
Type: TC
Location: 81623 - 82327 (-)
Gene ID: HRGMv2_2000_2_77
Type: pfam
Location: 82336 - 83529 (-)
Gene ID: HRGMv2_2000_2_78
Type: TC
Location: 83532 - 84974 (-)
Gene ID: HRGMv2_2000_2_79
Type: TC
Location: 85055 - 86524 (-)
Gene ID: HRGMv2_2000_2_80
Type: TC
Location: 86526 - 87866 (-)
Gene ID: HRGMv2_2000_2_81
Type: pfam
Location: 87913 - 88182 (-)
Gene ID: HRGMv2_2000_2_82
Type: pfam
Location: 88195 - 88998 (-)
Gene ID: HRGMv2_2000_2_83
Type: CAZyme
Location: 89301 - 89939 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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