Cluster: HRGMv2_1998_CGC11

🧬 Cluster Details

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_1998_4	HRGMv2_1998_4_124	120865	121407	+	2.A.107.1.2
NULL(UNKNOWN)	HRGMv2_1998_4	HRGMv2_1998_4_125	121782	121985	+	NULL(UNKNOWN) [View Structural Homologs]
pfam	HRGMv2_1998_4	HRGMv2_1998_4_126	122053	122415	+	Ribosomal_S30AE
CAZyme	HRGMv2_1998_4	HRGMv2_1998_4_127	122459	123244	+	GT2
pfam	HRGMv2_1998_4	HRGMv2_1998_4_128	123247	123909	-	N_methyl
STP	HRGMv2_1998_4	HRGMv2_1998_4_129	124141	124998	-	HEAT_PBS \| HEAT_PBS
TC	HRGMv2_1998_4	HRGMv2_1998_4_130	125311	126969	-	2.A.21.9.1

Gene ID: HRGMv2_1998_4_124
Type: TC
Location: 120865 - 121407 (+)

Gene ID: HRGMv2_1998_4_125
Type:
Location: 121782 - 121985 (+)

Gene ID: HRGMv2_1998_4_126
Type: pfam
Location: 122053 - 122415 (+)

Gene ID: HRGMv2_1998_4_127
Type: CAZyme
Location: 122459 - 123244 (+)

Gene ID: HRGMv2_1998_4_128
Type: pfam
Location: 123247 - 123909 (-)

Gene ID: HRGMv2_1998_4_129
Type: STP
Location: 124141 - 124998 (-)

Gene ID: HRGMv2_1998_4_130
Type: TC
Location: 125311 - 126969 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1998_4_125	vegan > omnivore	20.99803	0.01332
HRGMv2_1998_4_125	vegetarian > omnivore	23.20363	0.02973
HRGMv2_1998_4_129	vegetarian > omnivore	1.14383	0.02973