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Cluster: HRGMv2_1993_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1993_12 HRGMv2_1993_12_53 49677 51236 - GH13_3
pfam HRGMv2_1993_12 HRGMv2_1993_12_54 51352 52311 + ROK
CAZyme HRGMv2_1993_12 HRGMv2_1993_12_55 52313 53371 + GT9
TC HRGMv2_1993_12 HRGMv2_1993_12_56 53422 55326 + 9.B.34.1.3
pfam HRGMv2_1993_12 HRGMv2_1993_12_57 55345 56259 + AIRS | AIRS_C
TC HRGMv2_1993_12 HRGMv2_1993_12_58 56365 58038 + 4.C.1.1.4
Gene ID: HRGMv2_1993_12_53
Type: CAZyme
Location: 49677 - 51236 (-)
Gene ID: HRGMv2_1993_12_54
Type: pfam
Location: 51352 - 52311 (+)
Gene ID: HRGMv2_1993_12_55
Type: CAZyme
Location: 52313 - 53371 (+)
Gene ID: HRGMv2_1993_12_56
Type: TC
Location: 53422 - 55326 (+)
Gene ID: HRGMv2_1993_12_57
Type: pfam
Location: 55345 - 56259 (+)
Gene ID: HRGMv2_1993_12_58
Type: TC
Location: 56365 - 58038 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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