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Cluster: HRGMv2_1992_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1992_1 HRGMv2_1992_1_98 97720 98328 - GH23
pfam HRGMv2_1992_1 HRGMv2_1992_1_99 98658 99461 + PNP_UDP_1
TC HRGMv2_1992_1 HRGMv2_1992_1_100 99476 99745 + 9.A.4.2.1
TC HRGMv2_1992_1 HRGMv2_1992_1_101 99788 101128 + 2.A.38.1.1
TC HRGMv2_1992_1 HRGMv2_1992_1_102 101130 102602 + 2.A.38.1.1
pfam HRGMv2_1992_1 HRGMv2_1992_1_103 102701 104155 + OEP | OEP
pfam HRGMv2_1992_1 HRGMv2_1992_1_104 104155 105330 + HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC HRGMv2_1992_1 HRGMv2_1992_1_105 105357 106061 + 3.A.1.122.2
TC HRGMv2_1992_1 HRGMv2_1992_1_106 106184 107413 + 3.A.1.122.2
Gene ID: HRGMv2_1992_1_98
Type: CAZyme
Location: 97720 - 98328 (-)
Gene ID: HRGMv2_1992_1_99
Type: pfam
Location: 98658 - 99461 (+)
Gene ID: HRGMv2_1992_1_100
Type: TC
Location: 99476 - 99745 (+)
Gene ID: HRGMv2_1992_1_101
Type: TC
Location: 99788 - 101128 (+)
Gene ID: HRGMv2_1992_1_102
Type: TC
Location: 101130 - 102602 (+)
Gene ID: HRGMv2_1992_1_103
Type: pfam
Location: 102701 - 104155 (+)
Gene ID: HRGMv2_1992_1_104
Type: pfam
Location: 104155 - 105330 (+)
Gene ID: HRGMv2_1992_1_105
Type: TC
Location: 105357 - 106061 (+)
Gene ID: HRGMv2_1992_1_106
Type: TC
Location: 106184 - 107413 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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