Cluster: HRGMv2_1989_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1989
- CGC Family ID: CGCFAM_00272
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1989_2 | HRGMv2_1989_2_14 | 11887 | 12978 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1989_2 | HRGMv2_1989_2_15 | 13052 | 13210 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1989_2 | HRGMv2_1989_2_16 | 13565 | 14776 | + | 2.A.6.2.45 |
| TC | HRGMv2_1989_2 | HRGMv2_1989_2_17 | 14784 | 18095 | + | 2.A.6.2.22 |
| pfam | HRGMv2_1989_2 | HRGMv2_1989_2_18 | 18079 | 19758 | + | OEP | OEP |
| pfam | HRGMv2_1989_2 | HRGMv2_1989_2_19 | 19783 | 21774 | + | Helicase_C | UVR | ResIII | UvrB | UvrB_inter |
| TC | HRGMv2_1989_2 | HRGMv2_1989_2_20 | 21875 | 24289 | + | 3.A.10.3.2 |
Gene ID: HRGMv2_1989_2_14
Type: CAZyme
Location: 11887 - 12978 (-)
Type: CAZyme
Location: 11887 - 12978 (-)
Gene ID: HRGMv2_1989_2_15
Type:
Location: 13052 - 13210 (-)
Type:
Location: 13052 - 13210 (-)
Gene ID: HRGMv2_1989_2_16
Type: TC
Location: 13565 - 14776 (+)
Type: TC
Location: 13565 - 14776 (+)
Gene ID: HRGMv2_1989_2_17
Type: TC
Location: 14784 - 18095 (+)
Type: TC
Location: 14784 - 18095 (+)
Gene ID: HRGMv2_1989_2_18
Type: pfam
Location: 18079 - 19758 (+)
Type: pfam
Location: 18079 - 19758 (+)
Gene ID: HRGMv2_1989_2_19
Type: pfam
Location: 19783 - 21774 (+)
Type: pfam
Location: 19783 - 21774 (+)
Gene ID: HRGMv2_1989_2_20
Type: TC
Location: 21875 - 24289 (+)
Type: TC
Location: 21875 - 24289 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
RUG14156
Genus
Galligastranaerophilus_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.