Cluster: HRGMv2_1987_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1987
- CGC Family ID: CGCFAM_04032
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1987_5 | HRGMv2_1987_5_61 | 53827 | 54369 | + | 2.A.107.1.2 |
| NULL(UNKNOWN) | HRGMv2_1987_5 | HRGMv2_1987_5_62 | 54750 | 54953 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1987_5 | HRGMv2_1987_5_63 | 55068 | 55430 | + | Ribosomal_S30AE |
| CAZyme | HRGMv2_1987_5 | HRGMv2_1987_5_64 | 55455 | 56285 | + | GT2 |
| STP | HRGMv2_1987_5 | HRGMv2_1987_5_65 | 56371 | 57228 | - | HEAT_PBS | HEAT_PBS |
| TC | HRGMv2_1987_5 | HRGMv2_1987_5_66 | 57546 | 59204 | - | 2.A.21.9.1 |
Gene ID: HRGMv2_1987_5_61
Type: TC
Location: 53827 - 54369 (+)
Type: TC
Location: 53827 - 54369 (+)
Gene ID: HRGMv2_1987_5_62
Type:
Location: 54750 - 54953 (+)
Type:
Location: 54750 - 54953 (+)
Gene ID: HRGMv2_1987_5_63
Type: pfam
Location: 55068 - 55430 (+)
Type: pfam
Location: 55068 - 55430 (+)
Gene ID: HRGMv2_1987_5_64
Type: CAZyme
Location: 55455 - 56285 (+)
Type: CAZyme
Location: 55455 - 56285 (+)
Gene ID: HRGMv2_1987_5_65
Type: STP
Location: 56371 - 57228 (-)
Type: STP
Location: 56371 - 57228 (-)
Gene ID: HRGMv2_1987_5_66
Type: TC
Location: 57546 - 59204 (-)
Type: TC
Location: 57546 - 59204 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
Stercorousia
Species
Stercorousia sp000437435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1987_5_62 | vegetarian > omnivore | 21.92747 | 0.02973 |
| HRGMv2_1987_5_65 | vegetarian > omnivore | 1.36671 | 0.02973 |