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Cluster: HRGMv2_1984_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1984_7 HRGMv2_1984_7_3 2067 3470 + 3.A.2.1.2
TC HRGMv2_1984_7 HRGMv2_1984_7_4 3487 3879 + 3.A.2.1.5
pfam HRGMv2_1984_7 HRGMv2_1984_7_5 3934 4590 - N_methyl
TF HRGMv2_1984_7 HRGMv2_1984_7_6 4724 5044 + HTH_3
TC HRGMv2_1984_7 HRGMv2_1984_7_7 5060 5614 + 2.A.51.1.6
TC HRGMv2_1984_7 HRGMv2_1984_7_8 5611 6138 + 2.A.51.1.6
peptidase HRGMv2_1984_7 HRGMv2_1984_7_9 6244 7788 - S16.UNW
NULL(UNKNOWN) HRGMv2_1984_7 HRGMv2_1984_7_10 7810 8232 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1984_7 HRGMv2_1984_7_11 8282 9271 + GT9
Gene ID: HRGMv2_1984_7_3
Type: TC
Location: 2067 - 3470 (+)
Gene ID: HRGMv2_1984_7_4
Type: TC
Location: 3487 - 3879 (+)
Gene ID: HRGMv2_1984_7_5
Type: pfam
Location: 3934 - 4590 (-)
Gene ID: HRGMv2_1984_7_6
Type: TF
Location: 4724 - 5044 (+)
Gene ID: HRGMv2_1984_7_7
Type: TC
Location: 5060 - 5614 (+)
Gene ID: HRGMv2_1984_7_8
Type: TC
Location: 5611 - 6138 (+)
Gene ID: HRGMv2_1984_7_9
Type: peptidase
Location: 6244 - 7788 (-)
Gene ID: HRGMv2_1984_7_10
Type:
Location: 7810 - 8232 (-)
Gene ID: HRGMv2_1984_7_11
Type: CAZyme
Location: 8282 - 9271 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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