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Cluster: HRGMv2_1984_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1984_5 HRGMv2_1984_5_50 40099 40893 - 2.A.5.5.5
TC HRGMv2_1984_5 HRGMv2_1984_5_51 40976 41800 - 3.A.1.1.36
pfam HRGMv2_1984_5 HRGMv2_1984_5_52 42024 42668 - N_methyl
TF HRGMv2_1984_5 HRGMv2_1984_5_53 42916 43245 + HTH_3
CAZyme HRGMv2_1984_5 HRGMv2_1984_5_54 43335 45197 + GH77
STP HRGMv2_1984_5 HRGMv2_1984_5_55 45203 46042 + TPR_1 | TPR_1
NULL(UNKNOWN) HRGMv2_1984_5 HRGMv2_1984_5_56 46081 47292 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1984_5 HRGMv2_1984_5_57 47289 48635 - 3.A.6.1.1
Gene ID: HRGMv2_1984_5_50
Type: TC
Location: 40099 - 40893 (-)
Gene ID: HRGMv2_1984_5_51
Type: TC
Location: 40976 - 41800 (-)
Gene ID: HRGMv2_1984_5_52
Type: pfam
Location: 42024 - 42668 (-)
Gene ID: HRGMv2_1984_5_53
Type: TF
Location: 42916 - 43245 (+)
Gene ID: HRGMv2_1984_5_54
Type: CAZyme
Location: 43335 - 45197 (+)
Gene ID: HRGMv2_1984_5_55
Type: STP
Location: 45203 - 46042 (+)
Gene ID: HRGMv2_1984_5_56
Type:
Location: 46081 - 47292 (+)
Gene ID: HRGMv2_1984_5_57
Type: TC
Location: 47289 - 48635 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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