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Cluster: HRGMv2_1984_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1984_22 HRGMv2_1984_22_15 16202 16849 - GH23
pfam HRGMv2_1984_22 HRGMv2_1984_22_16 17182 17985 + PNP_UDP_1
pfam HRGMv2_1984_22 HRGMv2_1984_22_17 17998 18276 + YGGT
TC HRGMv2_1984_22 HRGMv2_1984_22_18 18309 19661 + 2.A.38.1.1
TC HRGMv2_1984_22 HRGMv2_1984_22_19 19652 21121 + 2.A.38.1.1
NULL(UNKNOWN) HRGMv2_1984_22 HRGMv2_1984_22_20 21148 21927 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1984_22 HRGMv2_1984_22_21 22031 23494 + OEP | OEP
TC HRGMv2_1984_22 HRGMv2_1984_22_22 23494 24651 + 8.A.1.6.2
TC HRGMv2_1984_22 HRGMv2_1984_22_23 24739 25467 + 3.A.1.122.2
TC HRGMv2_1984_22 HRGMv2_1984_22_24 25464 26693 + 3.A.1.122.12
Gene ID: HRGMv2_1984_22_15
Type: CAZyme
Location: 16202 - 16849 (-)
Gene ID: HRGMv2_1984_22_16
Type: pfam
Location: 17182 - 17985 (+)
Gene ID: HRGMv2_1984_22_17
Type: pfam
Location: 17998 - 18276 (+)
Gene ID: HRGMv2_1984_22_18
Type: TC
Location: 18309 - 19661 (+)
Gene ID: HRGMv2_1984_22_19
Type: TC
Location: 19652 - 21121 (+)
Gene ID: HRGMv2_1984_22_20
Type:
Location: 21148 - 21927 (+)
Gene ID: HRGMv2_1984_22_21
Type: pfam
Location: 22031 - 23494 (+)
Gene ID: HRGMv2_1984_22_22
Type: TC
Location: 23494 - 24651 (+)
Gene ID: HRGMv2_1984_22_23
Type: TC
Location: 24739 - 25467 (+)
Gene ID: HRGMv2_1984_22_24
Type: TC
Location: 25464 - 26693 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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