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Cluster: HRGMv2_1982_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1982_3 HRGMv2_1982_3_24 23706 24707 + GH109
pfam HRGMv2_1982_3 HRGMv2_1982_3_25 24736 25329 + CDP-OH_P_transf
TC HRGMv2_1982_3 HRGMv2_1982_3_26 25391 26806 + 3.A.2.1.2
TC HRGMv2_1982_3 HRGMv2_1982_3_27 26821 27234 + 3.A.2.1.5
pfam HRGMv2_1982_3 HRGMv2_1982_3_28 27323 28573 - ketoacyl-synt | Ketoacyl-synt_C
TC HRGMv2_1982_3 HRGMv2_1982_3_29 28670 28903 - 3.D.1.6.4
Gene ID: HRGMv2_1982_3_24
Type: CAZyme
Location: 23706 - 24707 (+)
Gene ID: HRGMv2_1982_3_25
Type: pfam
Location: 24736 - 25329 (+)
Gene ID: HRGMv2_1982_3_26
Type: TC
Location: 25391 - 26806 (+)
Gene ID: HRGMv2_1982_3_27
Type: TC
Location: 26821 - 27234 (+)
Gene ID: HRGMv2_1982_3_28
Type: pfam
Location: 27323 - 28573 (-)
Gene ID: HRGMv2_1982_3_29
Type: TC
Location: 28670 - 28903 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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