Cluster: HRGMv2_1981_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1981
- CGC Family ID: CGCFAM_09918
- Continent: South America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1981_1 | HRGMv2_1981_1_62 | 54751 | 55575 | + | 3.A.1.1.36 |
| STP | HRGMv2_1981_1 | HRGMv2_1981_1_63 | 55666 | 57105 | + | HATPase_c | HisKA | Response_reg |
| NULL(UNKNOWN) | HRGMv2_1981_1 | HRGMv2_1981_1_64 | 57102 | 57263 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1981_1 | HRGMv2_1981_1_65 | 57429 | 59471 | + | GH23 |
| TC | HRGMv2_1981_1 | HRGMv2_1981_1_66 | 59524 | 60504 | + | 3.A.1.5.20 |
Gene ID: HRGMv2_1981_1_62
Type: TC
Location: 54751 - 55575 (+)
Type: TC
Location: 54751 - 55575 (+)
Gene ID: HRGMv2_1981_1_63
Type: STP
Location: 55666 - 57105 (+)
Type: STP
Location: 55666 - 57105 (+)
Gene ID: HRGMv2_1981_1_64
Type:
Location: 57102 - 57263 (-)
Type:
Location: 57102 - 57263 (-)
Gene ID: HRGMv2_1981_1_65
Type: CAZyme
Location: 57429 - 59471 (+)
Type: CAZyme
Location: 57429 - 59471 (+)
Gene ID: HRGMv2_1981_1_66
Type: TC
Location: 59524 - 60504 (+)
Type: TC
Location: 59524 - 60504 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
Limenecus
Species
Limenecus avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.