Cluster: HRGMv2_1981_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1981
- Continent: South America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1981_4 | HRGMv2_1981_4_44 | 57064 | 59466 | + | GH38 |
| pfam | HRGMv2_1981_4 | HRGMv2_1981_4_45 | 59719 | 60267 | + | Adenine_glyco |
| pfam | HRGMv2_1981_4 | HRGMv2_1981_4_46 | 61293 | 65111 | - | Alpha-amylase | Alpha-amylase |
| TC | HRGMv2_1981_4 | HRGMv2_1981_4_47 | 65237 | 66190 | - | 1.A.35.3.1 |
| TC | HRGMv2_1981_4 | HRGMv2_1981_4_48 | 66251 | 67504 | - | 2.A.23.1.2 |
| TC | HRGMv2_1981_4 | HRGMv2_1981_4_49 | 67563 | 68525 | - | 1.A.30.1.4 |
| TC | HRGMv2_1981_4 | HRGMv2_1981_4_50 | 68529 | 69296 | - | 1.A.30.1.5 |
Gene ID: HRGMv2_1981_4_44
Type: CAZyme
Location: 57064 - 59466 (+)
Type: CAZyme
Location: 57064 - 59466 (+)
Gene ID: HRGMv2_1981_4_45
Type: pfam
Location: 59719 - 60267 (+)
Type: pfam
Location: 59719 - 60267 (+)
Gene ID: HRGMv2_1981_4_46
Type: pfam
Location: 61293 - 65111 (-)
Type: pfam
Location: 61293 - 65111 (-)
Gene ID: HRGMv2_1981_4_47
Type: TC
Location: 65237 - 66190 (-)
Type: TC
Location: 65237 - 66190 (-)
Gene ID: HRGMv2_1981_4_48
Type: TC
Location: 66251 - 67504 (-)
Type: TC
Location: 66251 - 67504 (-)
Gene ID: HRGMv2_1981_4_49
Type: TC
Location: 67563 - 68525 (-)
Type: TC
Location: 67563 - 68525 (-)
Gene ID: HRGMv2_1981_4_50
Type: TC
Location: 68529 - 69296 (-)
Type: TC
Location: 68529 - 69296 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
Limenecus
Species
Limenecus avicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.