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Cluster: HRGMv2_1975_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1975_4 HRGMv2_1975_4_18 15501 16808 + 2.A.6.4.2
TC HRGMv2_1975_4 HRGMv2_1975_4_19 16828 17823 + 2.A.6.4.3
TC HRGMv2_1975_4 HRGMv2_1975_4_20 17892 19121 - 3.A.1.122.2
TC HRGMv2_1975_4 HRGMv2_1975_4_21 19118 19846 - 3.A.1.122.2
pfam HRGMv2_1975_4 HRGMv2_1975_4_22 19888 21054 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
pfam HRGMv2_1975_4 HRGMv2_1975_4_23 21051 22511 - OEP | OEP
TC HRGMv2_1975_4 HRGMv2_1975_4_24 22597 24066 - 2.A.38.1.1
TC HRGMv2_1975_4 HRGMv2_1975_4_25 24070 25413 - 2.A.38.1.1
TC HRGMv2_1975_4 HRGMv2_1975_4_26 25450 25716 - 9.A.4.2.3
pfam HRGMv2_1975_4 HRGMv2_1975_4_27 25729 26532 - PNP_UDP_1
CAZyme HRGMv2_1975_4 HRGMv2_1975_4_28 26900 27523 + GH23
pfam HRGMv2_1975_4 HRGMv2_1975_4_29 27590 28693 - SMC_N | AAA_15 | AAA_21 | AAA_23
NULL(UNKNOWN) HRGMv2_1975_4 HRGMv2_1975_4_30 28798 29049 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1975_4 HRGMv2_1975_4_31 29074 30141 + 3.A.15.2.1
Gene ID: HRGMv2_1975_4_18
Type: TC
Location: 15501 - 16808 (+)
Gene ID: HRGMv2_1975_4_19
Type: TC
Location: 16828 - 17823 (+)
Gene ID: HRGMv2_1975_4_20
Type: TC
Location: 17892 - 19121 (-)
Gene ID: HRGMv2_1975_4_21
Type: TC
Location: 19118 - 19846 (-)
Gene ID: HRGMv2_1975_4_22
Type: pfam
Location: 19888 - 21054 (-)
Gene ID: HRGMv2_1975_4_23
Type: pfam
Location: 21051 - 22511 (-)
Gene ID: HRGMv2_1975_4_24
Type: TC
Location: 22597 - 24066 (-)
Gene ID: HRGMv2_1975_4_25
Type: TC
Location: 24070 - 25413 (-)
Gene ID: HRGMv2_1975_4_26
Type: TC
Location: 25450 - 25716 (-)
Gene ID: HRGMv2_1975_4_27
Type: pfam
Location: 25729 - 26532 (-)
Gene ID: HRGMv2_1975_4_28
Type: CAZyme
Location: 26900 - 27523 (+)
Gene ID: HRGMv2_1975_4_29
Type: pfam
Location: 27590 - 28693 (-)
Gene ID: HRGMv2_1975_4_30
Type:
Location: 28798 - 29049 (+)
Gene ID: HRGMv2_1975_4_31
Type: TC
Location: 29074 - 30141 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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