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Cluster: HRGMv2_1975_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1975_2 HRGMv2_1975_2_178 194970 195950 + 9.B.146.1.6
pfam HRGMv2_1975_2 HRGMv2_1975_2_179 195952 197304 + Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N
TC HRGMv2_1975_2 HRGMv2_1975_2_180 197285 198475 + 2.A.103.1.3
CAZyme HRGMv2_1975_2 HRGMv2_1975_2_181 198468 199583 + GT28
pfam HRGMv2_1975_2 HRGMv2_1975_2_182 199534 200778 + Mur_ligase_C | Mur_ligase_M
CAZyme HRGMv2_1975_2 HRGMv2_1975_2_183 200756 202315 - GT2
NULL(UNKNOWN) HRGMv2_1975_2 HRGMv2_1975_2_184 202535 204163 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1975_2 HRGMv2_1975_2_185 204644 205282 - Flavodoxin_2 | FMN_red
TC HRGMv2_1975_2 HRGMv2_1975_2_186 205279 206994 - 2.A.49.6.1
Gene ID: HRGMv2_1975_2_178
Type: TC
Location: 194970 - 195950 (+)
Gene ID: HRGMv2_1975_2_179
Type: pfam
Location: 195952 - 197304 (+)
Gene ID: HRGMv2_1975_2_180
Type: TC
Location: 197285 - 198475 (+)
Gene ID: HRGMv2_1975_2_181
Type: CAZyme
Location: 198468 - 199583 (+)
Gene ID: HRGMv2_1975_2_182
Type: pfam
Location: 199534 - 200778 (+)
Gene ID: HRGMv2_1975_2_183
Type: CAZyme
Location: 200756 - 202315 (-)
Gene ID: HRGMv2_1975_2_184
Type:
Location: 202535 - 204163 (-)
Gene ID: HRGMv2_1975_2_185
Type: pfam
Location: 204644 - 205282 (-)
Gene ID: HRGMv2_1975_2_186
Type: TC
Location: 205279 - 206994 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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