Cluster: HRGMv2_1974_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1974
- CGC Family ID: CGCFAM_02204
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1974_2 | HRGMv2_1974_2_227 | 232839 | 233573 | - | 3.D.1.4.1 |
| TC | HRGMv2_1974_2 | HRGMv2_1974_2_228 | 233588 | 235051 | - | 3.D.1.9.3 |
| TC | HRGMv2_1974_2 | HRGMv2_1974_2_229 | 235084 | 236517 | - | 3.D.1.9.1 |
| NULL(UNKNOWN) | HRGMv2_1974_2 | HRGMv2_1974_2_230 | 236510 | 237196 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1974_2 | HRGMv2_1974_2_231 | 237275 | 238192 | - | 3.D.1.9.3 |
| TC | HRGMv2_1974_2 | HRGMv2_1974_2_232 | 238195 | 240201 | - | 3.D.1.9.1 |
| CAZyme | HRGMv2_1974_2 | HRGMv2_1974_2_233 | 240437 | 241435 | + | GH109 |
Gene ID: HRGMv2_1974_2_227
Type: TC
Location: 232839 - 233573 (-)
Type: TC
Location: 232839 - 233573 (-)
Gene ID: HRGMv2_1974_2_228
Type: TC
Location: 233588 - 235051 (-)
Type: TC
Location: 233588 - 235051 (-)
Gene ID: HRGMv2_1974_2_229
Type: TC
Location: 235084 - 236517 (-)
Type: TC
Location: 235084 - 236517 (-)
Gene ID: HRGMv2_1974_2_230
Type:
Location: 236510 - 237196 (-)
Type:
Location: 236510 - 237196 (-)
Gene ID: HRGMv2_1974_2_231
Type: TC
Location: 237275 - 238192 (-)
Type: TC
Location: 237275 - 238192 (-)
Gene ID: HRGMv2_1974_2_232
Type: TC
Location: 238195 - 240201 (-)
Type: TC
Location: 238195 - 240201 (-)
Gene ID: HRGMv2_1974_2_233
Type: CAZyme
Location: 240437 - 241435 (+)
Type: CAZyme
Location: 240437 - 241435 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
CAG-196
Species
CAG-196 sp002102975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1974_2_227 | vegetarian > vegan | 2.54866 | 0.02199 |
| HRGMv2_1974_2_228 | vegetarian > vegan | 1.23795 | 0.02398 |
| HRGMv2_1974_2_229 | vegetarian > vegan | 1.12576 | 0.02398 |
| HRGMv2_1974_2_230 | vegetarian > vegan | 1.28804 | 0.02398 |
| HRGMv2_1974_2_231 | vegetarian > vegan | 1.21995 | 0.02398 |
| HRGMv2_1974_2_232 | vegetarian > vegan | 1.37779 | 0.02398 |