Cluster: HRGMv2_1974_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1974
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1974_2 | HRGMv2_1974_2_166 | 166079 | 167272 | - | 9.B.174.1.1 |
| peptidase | HRGMv2_1974_2 | HRGMv2_1974_2_167 | 167402 | 169042 | - | M26.UPW |
| NULL(UNKNOWN) | HRGMv2_1974_2 | HRGMv2_1974_2_168 | 169219 | 170787 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1974_2 | HRGMv2_1974_2_169 | 170926 | 173028 | + | GH38 |
| pfam | HRGMv2_1974_2 | HRGMv2_1974_2_170 | 173025 | 173873 | - | Glucosaminidase |
| pfam | HRGMv2_1974_2 | HRGMv2_1974_2_171 | 174012 | 174356 | - | DUF6812 |
| TC | HRGMv2_1974_2 | HRGMv2_1974_2_172 | 174409 | 175299 | - | 2.A.115.1.1 |
Gene ID: HRGMv2_1974_2_166
Type: TC
Location: 166079 - 167272 (-)
Type: TC
Location: 166079 - 167272 (-)
Gene ID: HRGMv2_1974_2_167
Type: peptidase
Location: 167402 - 169042 (-)
Type: peptidase
Location: 167402 - 169042 (-)
Gene ID: HRGMv2_1974_2_168
Type:
Location: 169219 - 170787 (-)
Type:
Location: 169219 - 170787 (-)
Gene ID: HRGMv2_1974_2_169
Type: CAZyme
Location: 170926 - 173028 (+)
Type: CAZyme
Location: 170926 - 173028 (+)
Gene ID: HRGMv2_1974_2_170
Type: pfam
Location: 173025 - 173873 (-)
Type: pfam
Location: 173025 - 173873 (-)
Gene ID: HRGMv2_1974_2_171
Type: pfam
Location: 174012 - 174356 (-)
Type: pfam
Location: 174012 - 174356 (-)
Gene ID: HRGMv2_1974_2_172
Type: TC
Location: 174409 - 175299 (-)
Type: TC
Location: 174409 - 175299 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
CAG-196
Species
CAG-196 sp002102975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1974_2_167 | vegetarian > vegan | 1.24581 | 0.02398 |
| HRGMv2_1974_2_168 | vegetarian > vegan | 1.25979 | 0.02398 |
| HRGMv2_1974_2_169 | vegetarian > vegan | 1.20663 | 0.02398 |
| HRGMv2_1974_2_170 | vegetarian > vegan | 1.30527 | 0.02398 |
| HRGMv2_1974_2_171 | vegetarian > vegan | 1.43559 | 0.02398 |
| HRGMv2_1974_2_172 | vegetarian > vegan | 1.39114 | 0.02398 |