Cluster: HRGMv2_1974_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1974
- CGC Family ID: CGCFAM_00527
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1974_1 | HRGMv2_1974_1_526 | 498419 | 500728 | - | GT2 |
| TF | HRGMv2_1974_1 | HRGMv2_1974_1_527 | 500865 | 501215 | + | HTH_3 |
| NULL(UNKNOWN) | HRGMv2_1974_1 | HRGMv2_1974_1_528 | 501212 | 502435 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1974_1 | HRGMv2_1974_1_529 | 502535 | 503953 | - | 2.A.36.6.11 |
Gene ID: HRGMv2_1974_1_526
Type: CAZyme
Location: 498419 - 500728 (-)
Type: CAZyme
Location: 498419 - 500728 (-)
Gene ID: HRGMv2_1974_1_527
Type: TF
Location: 500865 - 501215 (+)
Type: TF
Location: 500865 - 501215 (+)
Gene ID: HRGMv2_1974_1_528
Type:
Location: 501212 - 502435 (-)
Type:
Location: 501212 - 502435 (-)
Gene ID: HRGMv2_1974_1_529
Type: TC
Location: 502535 - 503953 (-)
Type: TC
Location: 502535 - 503953 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
CAG-196
Species
CAG-196 sp002102975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1974_1_526 | vegetarian > vegan | 2.94554 | 0.02398 |
| HRGMv2_1974_1_527 | vegetarian > vegan | 1.24633 | 0.02398 |
| HRGMv2_1974_1_529 | vegetarian > vegan | 1.39186 | 0.02398 |