Cluster: HRGMv2_1974_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1974
- CGC Family ID: CGCFAM_00013
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1974_1 | HRGMv2_1974_1_217 | 199795 | 201201 | + | 3.A.2.1.2 |
| TC | HRGMv2_1974_1 | HRGMv2_1974_1_218 | 201256 | 201648 | + | 3.A.2.1.5 |
| NULL(UNKNOWN) | HRGMv2_1974_1 | HRGMv2_1974_1_219 | 201700 | 202101 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_1974_1 | HRGMv2_1974_1_220 | 202098 | 203825 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1974_1 | HRGMv2_1974_1_221 | 203843 | 204802 | + | 9.B.146.1.6 |
| pfam | HRGMv2_1974_1 | HRGMv2_1974_1_222 | 204920 | 206335 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_1974_1 | HRGMv2_1974_1_223 | 206367 | 207470 | + | 2.A.103.1.3 |
| CAZyme | HRGMv2_1974_1 | HRGMv2_1974_1_224 | 207451 | 208557 | + | GT28 |
Gene ID: HRGMv2_1974_1_217
Type: TC
Location: 199795 - 201201 (+)
Type: TC
Location: 199795 - 201201 (+)
Gene ID: HRGMv2_1974_1_218
Type: TC
Location: 201256 - 201648 (+)
Type: TC
Location: 201256 - 201648 (+)
Gene ID: HRGMv2_1974_1_219
Type:
Location: 201700 - 202101 (+)
Type:
Location: 201700 - 202101 (+)
Gene ID: HRGMv2_1974_1_220
Type:
Location: 202098 - 203825 (+)
Type:
Location: 202098 - 203825 (+)
Gene ID: HRGMv2_1974_1_221
Type: TC
Location: 203843 - 204802 (+)
Type: TC
Location: 203843 - 204802 (+)
Gene ID: HRGMv2_1974_1_222
Type: pfam
Location: 204920 - 206335 (+)
Type: pfam
Location: 204920 - 206335 (+)
Gene ID: HRGMv2_1974_1_223
Type: TC
Location: 206367 - 207470 (+)
Type: TC
Location: 206367 - 207470 (+)
Gene ID: HRGMv2_1974_1_224
Type: CAZyme
Location: 207451 - 208557 (+)
Type: CAZyme
Location: 207451 - 208557 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
CAG-196
Species
CAG-196 sp002102975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1974_1_218 | vegetarian > vegan | 1.67501 | 0.02398 |
| HRGMv2_1974_1_220 | vegetarian > vegan | 1.10687 | 0.02398 |
| HRGMv2_1974_1_221 | vegetarian > vegan | 2.07984 | 0.01644 |
| HRGMv2_1974_1_222 | vegetarian > vegan | 1.33801 | 0.02398 |
| HRGMv2_1974_1_223 | vegetarian > vegan | 1.66715 | 0.02398 |