Cluster: HRGMv2_1974_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1974
- CGC Family ID: CGCFAM_01837
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1974_9 | HRGMv2_1974_9_13 | 13380 | 14474 | - | 9.B.141.1.2 |
| STP | HRGMv2_1974_9 | HRGMv2_1974_9_14 | 14489 | 15565 | - | AAA |
| pfam | HRGMv2_1974_9 | HRGMv2_1974_9_15 | 15588 | 16601 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| CAZyme | HRGMv2_1974_9 | HRGMv2_1974_9_16 | 16702 | 17637 | + | GT2 |
Gene ID: HRGMv2_1974_9_13
Type: TC
Location: 13380 - 14474 (-)
Type: TC
Location: 13380 - 14474 (-)
Gene ID: HRGMv2_1974_9_14
Type: STP
Location: 14489 - 15565 (-)
Type: STP
Location: 14489 - 15565 (-)
Gene ID: HRGMv2_1974_9_15
Type: pfam
Location: 15588 - 16601 (-)
Type: pfam
Location: 15588 - 16601 (-)
Gene ID: HRGMv2_1974_9_16
Type: CAZyme
Location: 16702 - 17637 (+)
Type: CAZyme
Location: 16702 - 17637 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
CAG-196
Species
CAG-196 sp002102975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1974_9_13 | vegetarian > vegan | 2.61096 | 0.01644 |
| HRGMv2_1974_9_15 | vegetarian > vegan | 1.82710 | 0.02398 |
| HRGMv2_1974_9_16 | vegetarian > vegan | 1.69931 | 0.02398 |