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Cluster: HRGMv2_1974_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1974_6 HRGMv2_1974_6_24 39727 40773 + 2.A.109.3.1
pfam HRGMv2_1974_6 HRGMv2_1974_6_25 40763 41626 + PolyA_pol
pfam HRGMv2_1974_6 HRGMv2_1974_6_26 41623 42492 + Glycos_transf_2
CAZyme HRGMv2_1974_6 HRGMv2_1974_6_27 42484 43353 - GT2
CAZyme HRGMv2_1974_6 HRGMv2_1974_6_28 43397 44416 - GT2
CAZyme HRGMv2_1974_6 HRGMv2_1974_6_29 44462 45298 + GT2
CAZyme HRGMv2_1974_6 HRGMv2_1974_6_30 45295 46503 + GT4
Gene ID: HRGMv2_1974_6_24
Type: TC
Location: 39727 - 40773 (+)
Gene ID: HRGMv2_1974_6_25
Type: pfam
Location: 40763 - 41626 (+)
Gene ID: HRGMv2_1974_6_26
Type: pfam
Location: 41623 - 42492 (+)
Gene ID: HRGMv2_1974_6_27
Type: CAZyme
Location: 42484 - 43353 (-)
Gene ID: HRGMv2_1974_6_28
Type: CAZyme
Location: 43397 - 44416 (-)
Gene ID: HRGMv2_1974_6_29
Type: CAZyme
Location: 44462 - 45298 (+)
Gene ID: HRGMv2_1974_6_30
Type: CAZyme
Location: 45295 - 46503 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1974_6_24 vegetarian > vegan 1.38079 0.02398
HRGMv2_1974_6_29 vegetarian > vegan 1.19316 0.02398

🧭 Explore Read Mapping of CGC

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