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Cluster: HRGMv2_1974_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1974_4 HRGMv2_1974_4_72 70234 71679 - 3.A.25.2.1
pfam HRGMv2_1974_4 HRGMv2_1974_4_73 71702 76501 - Alpha-amylase
CAZyme HRGMv2_1974_4 HRGMv2_1974_4_74 76665 79286 - GT5
pfam HRGMv2_1974_4 HRGMv2_1974_4_75 79283 80341 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | KR | NAD_binding_10 | GDP_Man_Dehyd
NULL(UNKNOWN) HRGMv2_1974_4 HRGMv2_1974_4_76 80353 80685 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1974_4 HRGMv2_1974_4_77 80757 82103 - 3.A.6.1.1
Gene ID: HRGMv2_1974_4_72
Type: TC
Location: 70234 - 71679 (-)
Gene ID: HRGMv2_1974_4_73
Type: pfam
Location: 71702 - 76501 (-)
Gene ID: HRGMv2_1974_4_74
Type: CAZyme
Location: 76665 - 79286 (-)
Gene ID: HRGMv2_1974_4_75
Type: pfam
Location: 79283 - 80341 (-)
Gene ID: HRGMv2_1974_4_76
Type:
Location: 80353 - 80685 (-)
Gene ID: HRGMv2_1974_4_77
Type: TC
Location: 80757 - 82103 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1974_4_72 vegetarian > vegan 1.47451 0.02398
HRGMv2_1974_4_73 vegetarian > vegan 1.47128 0.02398
HRGMv2_1974_4_76 vegetarian > vegan 1.42504 0.02398

🧭 Explore Read Mapping of CGC

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