Cluster: HRGMv2_1974_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1974
- CGC Family ID: CGCFAM_06082
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1974_4 | HRGMv2_1974_4_56 | 53689 | 54798 | + | 8.A.1.1.2 |
| TC | HRGMv2_1974_4 | HRGMv2_1974_4_57 | 54779 | 56317 | + | 2.A.1.3.36 |
| NULL(UNKNOWN) | HRGMv2_1974_4 | HRGMv2_1974_4_58 | 56411 | 56578 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1974_4 | HRGMv2_1974_4_59 | 56635 | 57192 | + | Hexapep | Mac | Hexapep_2 |
| CAZyme | HRGMv2_1974_4 | HRGMv2_1974_4_60 | 57240 | 58994 | - | GH13_3 |
Gene ID: HRGMv2_1974_4_56
Type: TC
Location: 53689 - 54798 (+)
Type: TC
Location: 53689 - 54798 (+)
Gene ID: HRGMv2_1974_4_57
Type: TC
Location: 54779 - 56317 (+)
Type: TC
Location: 54779 - 56317 (+)
Gene ID: HRGMv2_1974_4_58
Type:
Location: 56411 - 56578 (+)
Type:
Location: 56411 - 56578 (+)
Gene ID: HRGMv2_1974_4_59
Type: pfam
Location: 56635 - 57192 (+)
Type: pfam
Location: 56635 - 57192 (+)
Gene ID: HRGMv2_1974_4_60
Type: CAZyme
Location: 57240 - 58994 (-)
Type: CAZyme
Location: 57240 - 58994 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
CAG-196
Species
CAG-196 sp002102975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1974_4_56 | vegetarian > vegan | 1.30936 | 0.02398 |
| HRGMv2_1974_4_57 | vegetarian > vegan | 1.35792 | 0.02398 |
| HRGMv2_1974_4_58 | vegetarian > vegan | 1.17044 | 0.02398 |
| HRGMv2_1974_4_59 | vegetarian > vegan | 1.36081 | 0.02398 |