Cluster: HRGMv2_1971_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1971
- CGC Family ID: CGCFAM_09915
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1971_3 | HRGMv2_1971_3_275 | 291772 | 293748 | + | GH38 |
| pfam | HRGMv2_1971_3 | HRGMv2_1971_3_276 | 294773 | 296137 | + | Gln-synt_C | Gln-synt_N |
| TC | HRGMv2_1971_3 | HRGMv2_1971_3_277 | 296222 | 297031 | + | 3.A.1.27.1 |
| TC | HRGMv2_1971_3 | HRGMv2_1971_3_278 | 297050 | 297775 | + | 3.A.1.27.2 |
Gene ID: HRGMv2_1971_3_275
Type: CAZyme
Location: 291772 - 293748 (+)
Type: CAZyme
Location: 291772 - 293748 (+)
Gene ID: HRGMv2_1971_3_276
Type: pfam
Location: 294773 - 296137 (+)
Type: pfam
Location: 294773 - 296137 (+)
Gene ID: HRGMv2_1971_3_277
Type: TC
Location: 296222 - 297031 (+)
Type: TC
Location: 296222 - 297031 (+)
Gene ID: HRGMv2_1971_3_278
Type: TC
Location: 297050 - 297775 (+)
Type: TC
Location: 297050 - 297775 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Cyanobacteriota
Class
Vampirovibrionia
Order
Gastranaerophilales
Family
Gastranaerophilaceae
Genus
Stercorousia
Species
Stercorousia sp001765415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1971_3_276 | vegan > omnivore | 19.99845 | 0.02973 |
| HRGMv2_1971_3_276 | vegetarian > omnivore | 22.06381 | 0.00224 |