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Cluster: HRGMv2_1971_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1971_1 HRGMv2_1971_1_43 41481 43037 - 2.A.25.1.3
NULL(UNKNOWN) HRGMv2_1971_1 HRGMv2_1971_1_44 43085 43795 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1971_1 HRGMv2_1971_1_45 44356 45930 + GT2
pfam HRGMv2_1971_1 HRGMv2_1971_1_46 45872 47056 - Mur_ligase_C | Mur_ligase_M
CAZyme HRGMv2_1971_1 HRGMv2_1971_1_47 47040 48146 - GT28
TC HRGMv2_1971_1 HRGMv2_1971_1_48 48146 49321 - 2.A.103.1.3
pfam HRGMv2_1971_1 HRGMv2_1971_1_49 49299 50660 - Mur_ligase_C | Mur_ligase_M | MurD-like_N
TC HRGMv2_1971_1 HRGMv2_1971_1_50 50660 51640 - 9.B.146.1.6
Gene ID: HRGMv2_1971_1_43
Type: TC
Location: 41481 - 43037 (-)
Gene ID: HRGMv2_1971_1_44
Type:
Location: 43085 - 43795 (-)
Gene ID: HRGMv2_1971_1_45
Type: CAZyme
Location: 44356 - 45930 (+)
Gene ID: HRGMv2_1971_1_46
Type: pfam
Location: 45872 - 47056 (-)
Gene ID: HRGMv2_1971_1_47
Type: CAZyme
Location: 47040 - 48146 (-)
Gene ID: HRGMv2_1971_1_48
Type: TC
Location: 48146 - 49321 (-)
Gene ID: HRGMv2_1971_1_49
Type: pfam
Location: 49299 - 50660 (-)
Gene ID: HRGMv2_1971_1_50
Type: TC
Location: 50660 - 51640 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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