Cluster: HRGMv2_1966_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1966
- CGC Family ID: CGCFAM_06079
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1966_5 | HRGMv2_1966_5_2 | 575 | 1348 | + | 3.A.1.132.3 |
| STP | HRGMv2_1966_5 | HRGMv2_1966_5_3 | 1372 | 2043 | + | AraC_binding |
| pfam | HRGMv2_1966_5 | HRGMv2_1966_5_4 | 2270 | 4099 | + | Hydrolase | Mur_ligase_C | Mur_ligase_M | PNK3P | Hydrolase_like | HAD_2 |
| TC | HRGMv2_1966_5 | HRGMv2_1966_5_5 | 4110 | 5195 | + | 9.B.146.1.6 |
| pfam | HRGMv2_1966_5 | HRGMv2_1966_5_6 | 5195 | 6493 | + | Mur_ligase_M |
| CAZyme | HRGMv2_1966_5 | HRGMv2_1966_5_7 | 6503 | 7567 | + | GT28 |
Gene ID: HRGMv2_1966_5_2
Type: TC
Location: 575 - 1348 (+)
Type: TC
Location: 575 - 1348 (+)
Gene ID: HRGMv2_1966_5_3
Type: STP
Location: 1372 - 2043 (+)
Type: STP
Location: 1372 - 2043 (+)
Gene ID: HRGMv2_1966_5_4
Type: pfam
Location: 2270 - 4099 (+)
Type: pfam
Location: 2270 - 4099 (+)
Gene ID: HRGMv2_1966_5_5
Type: TC
Location: 4110 - 5195 (+)
Type: TC
Location: 4110 - 5195 (+)
Gene ID: HRGMv2_1966_5_6
Type: pfam
Location: 5195 - 6493 (+)
Type: pfam
Location: 5195 - 6493 (+)
Gene ID: HRGMv2_1966_5_7
Type: CAZyme
Location: 6503 - 7567 (+)
Type: CAZyme
Location: 6503 - 7567 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Fusobacterium
Species
Fusobacterium sp000235465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.