Cluster: HRGMv2_1962_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1962
- CGC Family ID: CGCFAM_00207
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1962_5 | HRGMv2_1962_5_62 | 65323 | 66066 | - | 3.A.1.4.6 |
| TC | HRGMv2_1962_5 | HRGMv2_1962_5_63 | 66293 | 66952 | + | 3.A.1.24.2 |
| TC | HRGMv2_1962_5 | HRGMv2_1962_5_64 | 66954 | 67580 | + | 3.A.1.24.5 |
| TC | HRGMv2_1962_5 | HRGMv2_1962_5_65 | 67582 | 68358 | + | 3.A.1.24.5 |
| NULL(UNKNOWN) | HRGMv2_1962_5 | HRGMv2_1962_5_66 | 68442 | 69254 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1962_5 | HRGMv2_1962_5_67 | 69274 | 70356 | - | GT28 |
Gene ID: HRGMv2_1962_5_62
Type: TC
Location: 65323 - 66066 (-)
Type: TC
Location: 65323 - 66066 (-)
Gene ID: HRGMv2_1962_5_63
Type: TC
Location: 66293 - 66952 (+)
Type: TC
Location: 66293 - 66952 (+)
Gene ID: HRGMv2_1962_5_64
Type: TC
Location: 66954 - 67580 (+)
Type: TC
Location: 66954 - 67580 (+)
Gene ID: HRGMv2_1962_5_65
Type: TC
Location: 67582 - 68358 (+)
Type: TC
Location: 67582 - 68358 (+)
Gene ID: HRGMv2_1962_5_66
Type:
Location: 68442 - 69254 (+)
Type:
Location: 68442 - 69254 (+)
Gene ID: HRGMv2_1962_5_67
Type: CAZyme
Location: 69274 - 70356 (-)
Type: CAZyme
Location: 69274 - 70356 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Leptotrichiaceae
Genus
Sneathia
Species
Sneathia sanguinegens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.