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Cluster: HRGMv2_1962_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1962_3 HRGMv2_1962_3_15 12407 13591 + GH88
TC HRGMv2_1962_3 HRGMv2_1962_3_16 13605 14096 + 4.A.6.1.14
TC HRGMv2_1962_3 HRGMv2_1962_3_17 14109 14879 + 4.A.6.1.14
TC HRGMv2_1962_3 HRGMv2_1962_3_18 14869 15675 + 4.A.6.1.14
CAZyme HRGMv2_1962_3 HRGMv2_1962_3_19 15719 17473 + PL12_1
CAZyme HRGMv2_1962_3 HRGMv2_1962_3_20 17478 19445 + PL8
TF HRGMv2_1962_3 HRGMv2_1962_3_21 19515 20237 + GntR
TC HRGMv2_1962_3 HRGMv2_1962_3_22 20408 21670 + 2.A.40.1.1
Gene ID: HRGMv2_1962_3_15
Type: CAZyme
Location: 12407 - 13591 (+)
Gene ID: HRGMv2_1962_3_16
Type: TC
Location: 13605 - 14096 (+)
Gene ID: HRGMv2_1962_3_17
Type: TC
Location: 14109 - 14879 (+)
Gene ID: HRGMv2_1962_3_18
Type: TC
Location: 14869 - 15675 (+)
Gene ID: HRGMv2_1962_3_19
Type: CAZyme
Location: 15719 - 17473 (+)
Gene ID: HRGMv2_1962_3_20
Type: CAZyme
Location: 17478 - 19445 (+)
Gene ID: HRGMv2_1962_3_21
Type: TF
Location: 19515 - 20237 (+)
Gene ID: HRGMv2_1962_3_22
Type: TC
Location: 20408 - 21670 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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