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Cluster: HRGMv2_1962_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1962_2 HRGMv2_1962_2_212 236448 237419 + 3.A.1.5.2
TC HRGMv2_1962_2 HRGMv2_1962_2_213 237419 238369 + 3.A.1.5.2
TC HRGMv2_1962_2 HRGMv2_1962_2_214 238381 239478 + 3.A.1.5.25
TC HRGMv2_1962_2 HRGMv2_1962_2_215 239478 240410 + 3.A.1.5.19
TC HRGMv2_1962_2 HRGMv2_1962_2_216 240407 242002 + 3.A.1.5.25
TC HRGMv2_1962_2 HRGMv2_1962_2_217 242014 243606 + 3.A.1.5.2
pfam HRGMv2_1962_2 HRGMv2_1962_2_218 243607 244398 + Hydrolase | S6PP | S6PP | Hydrolase_3
CAZyme HRGMv2_1962_2 HRGMv2_1962_2_219 244439 247465 - CBM41 | CBM41 | GH13_12
CAZyme HRGMv2_1962_2 HRGMv2_1962_2_220 247473 249074 - CBM34 | GH13_20
Gene ID: HRGMv2_1962_2_212
Type: TC
Location: 236448 - 237419 (+)
Gene ID: HRGMv2_1962_2_213
Type: TC
Location: 237419 - 238369 (+)
Gene ID: HRGMv2_1962_2_214
Type: TC
Location: 238381 - 239478 (+)
Gene ID: HRGMv2_1962_2_215
Type: TC
Location: 239478 - 240410 (+)
Gene ID: HRGMv2_1962_2_216
Type: TC
Location: 240407 - 242002 (+)
Gene ID: HRGMv2_1962_2_217
Type: TC
Location: 242014 - 243606 (+)
Gene ID: HRGMv2_1962_2_218
Type: pfam
Location: 243607 - 244398 (+)
Gene ID: HRGMv2_1962_2_219
Type: CAZyme
Location: 244439 - 247465 (-)
Gene ID: HRGMv2_1962_2_220
Type: CAZyme
Location: 247473 - 249074 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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