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Cluster: HRGMv2_1962_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1962_2 HRGMv2_1962_2_92 91621 93303 + 3.A.1.135.5
TC HRGMv2_1962_2 HRGMv2_1962_2_93 93293 95032 + 3.A.1.135.5
pfam HRGMv2_1962_2 HRGMv2_1962_2_94 95163 95897 - Radical_SAM | Fer4_12
pfam HRGMv2_1962_2 HRGMv2_1962_2_95 95973 98207 - Gly_radical | PFL-like
TC HRGMv2_1962_2 HRGMv2_1962_2_96 98392 99759 - 3.A.1.31.2
TC HRGMv2_1962_2 HRGMv2_1962_2_97 99753 100454 - 3.A.1.31.1
TC HRGMv2_1962_2 HRGMv2_1962_2_98 100456 101043 - 3.A.1.31.2
TC HRGMv2_1962_2 HRGMv2_1962_2_99 101176 102441 - 9.B.18.1.3
CAZyme HRGMv2_1962_2 HRGMv2_1962_2_100 102441 103184 - GT2
pfam HRGMv2_1962_2 HRGMv2_1962_2_101 103172 104251 - Glyphos_transf
CAZyme HRGMv2_1962_2 HRGMv2_1962_2_102 104244 105071 - GT2
CAZyme HRGMv2_1962_2 HRGMv2_1962_2_103 105073 105786 - GT32
TC HRGMv2_1962_2 HRGMv2_1962_2_104 105765 107102 - 9.B.67.3.2
CAZyme HRGMv2_1962_2 HRGMv2_1962_2_105 107089 107949 - GT2
Gene ID: HRGMv2_1962_2_92
Type: TC
Location: 91621 - 93303 (+)
Gene ID: HRGMv2_1962_2_93
Type: TC
Location: 93293 - 95032 (+)
Gene ID: HRGMv2_1962_2_94
Type: pfam
Location: 95163 - 95897 (-)
Gene ID: HRGMv2_1962_2_95
Type: pfam
Location: 95973 - 98207 (-)
Gene ID: HRGMv2_1962_2_96
Type: TC
Location: 98392 - 99759 (-)
Gene ID: HRGMv2_1962_2_97
Type: TC
Location: 99753 - 100454 (-)
Gene ID: HRGMv2_1962_2_98
Type: TC
Location: 100456 - 101043 (-)
Gene ID: HRGMv2_1962_2_99
Type: TC
Location: 101176 - 102441 (-)
Gene ID: HRGMv2_1962_2_100
Type: CAZyme
Location: 102441 - 103184 (-)
Gene ID: HRGMv2_1962_2_101
Type: pfam
Location: 103172 - 104251 (-)
Gene ID: HRGMv2_1962_2_102
Type: CAZyme
Location: 104244 - 105071 (-)
Gene ID: HRGMv2_1962_2_103
Type: CAZyme
Location: 105073 - 105786 (-)
Gene ID: HRGMv2_1962_2_104
Type: TC
Location: 105765 - 107102 (-)
Gene ID: HRGMv2_1962_2_105
Type: CAZyme
Location: 107089 - 107949 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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